| Run summary data | |
| Master run log | log_20150812082038.txt |
| Previous run log | log_20150812074038.txt |
| BIOM table statistics | biom_table_summary.txt |
| Filtered BIOM table (minimum sequence count: 250) | table_mc250.biom.gz |
| rarefied BIOM table (sampling depth: 250) | table_even250.biom.gz |
| Taxonomic summary results | |
| Taxa summary bar plots | bar_charts.html |
| Taxa summary area plots | area_charts.html |
| Taxonomic summary results (by body_site) | |
| Taxa summary bar plots | bar_charts.html |
| Taxa summary area plots | area_charts.html |
| Group significance results | |
| Category significance (body_site) | group_significance_body_site.txt |
| Alpha diversity results | |
| Alpha rarefaction plots | rarefaction_plots.html |
| Alpha diversity statistics (body_site, chao1) | body_site_stats.txt |
| Alpha diversity boxplots (body_site, chao1) | body_site_boxplots.pdf |
| Alpha diversity statistics (body_site, observed_otus) | body_site_stats.txt |
| Alpha diversity boxplots (body_site, observed_otus) | body_site_boxplots.pdf |
| Alpha diversity statistics (body_site, PD_whole_tree) | body_site_stats.txt |
| Alpha diversity boxplots (body_site, PD_whole_tree) | body_site_boxplots.pdf |
| Beta diversity results (even sampling: 250) | |
| Distance boxplots (unweighted_unifrac) | body_site_Distances.pdf |
| Distance boxplots statistics (unweighted_unifrac) | body_site_Stats.txt |
| PCoA plot (unweighted_unifrac) | index.html |
| Distance matrix (unweighted_unifrac) | unweighted_unifrac_dm.txt |
| Principal coordinate matrix (unweighted_unifrac) | unweighted_unifrac_pc.txt |
| Distance boxplots (weighted_unifrac) | body_site_Distances.pdf |
| Distance boxplots statistics (weighted_unifrac) | body_site_Stats.txt |
| PCoA plot (weighted_unifrac) | index.html |
| Distance matrix (weighted_unifrac) | weighted_unifrac_dm.txt |
| Principal coordinate matrix (weighted_unifrac) | weighted_unifrac_pc.txt |
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