Logging started at 07:35:14 on 12 Aug 2015
QIIME version: 1.9.1-dev, master@24ef510

qiime_config values:
profile	default
pick_otus_reference_seqs_fp	/Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
sc_queue	all.q
pynast_template_alignment_fp	/Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.fasta
cluster_jobs_fp	start_parallel_jobs.py
assign_taxonomy_reference_seqs_fp	/Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
torque_queue	friendlyq
n_engines	2
jobs_to_start	1
denoiser_min_per_core	50
assign_taxonomy_id_to_taxonomy_fp	/Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
temp_dir	/var/folders/17/c40mmrx56w918s7lp6ds2jvw0000gq/T/
blastall_fp	blastall
seconds_to_sleep	1

parameter file values:
parallel:jobs_to_start	1

Input file md5 sums:
workshop_seqs.fna: f2fa7b7d61821d9bb8798e861e83af03
/Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta: 50b2269712b3738afb41892bed936c29
/Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt: 56ef15dccf2e931ec173f4f977ed649b

Forcing --suppress_new_clusters as this is closed-reference OTU picking.

Executing commands.

# Pick OTUs command 
pick_otus.py -i workshop_seqs.fna -o pick_close_ref/uclust_ref_picked_otus -r /Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta -m uclust_ref  --suppress_new_clusters

Stdout:

Stderr:

# Make OTU table command 
make_otu_table.py -i pick_close_ref/uclust_ref_picked_otus/workshop_seqs_otus.txt -t /Users/antoniog/.virtualenvs/qiita/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt -o pick_close_ref/otu_table.biom 

Stdout:

Stderr:


Logging stopped at 07:37:58 on 12 Aug 2015
