$ minimap2 --version 2.30-r1287 $ minimap2 -d WoLr2.map-hifi.mmi --seed 42 -x map-hifi -t 8 -a --MD --eqx <(xzcat /projects/wol/qiyun/wol2/genomes/all.fna.xz) [M::mm_idx_gen::363.796*1.32] collected minimizers [M::mm_idx_gen::386.666*1.55] sorted minimizers @HD VN:1.6 SO:unsorted GO:query @PG ID:minimap2 PN:minimap2 VN:2.30-r1287 CL:minimap2 -d WoLr2.map-hifi.mmi --seed 42 -x map-hifi -t 8 -a --MD --eqx /dev/fd/63 [WARNING] For a multi-part index, no @SQ lines will be outputted. Please use --split-prefix. [M::main::523.981*1.37] loaded/built the index for 2238 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 2238 [M::mm_idx_stat::541.586*1.35] distinct minimizers: 631656690 (86.91% are singletons); average occurrences: 1.268; average spacing: 10.032; total length: 8038219593 [M::mm_idx_gen::902.977*1.33] collected minimizers [M::mm_idx_gen::921.186*1.43] sorted minimizers [M::main::1067.007*1.35] loaded/built the index for 2228 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 2228 [M::mm_idx_stat::1084.097*1.34] distinct minimizers: 649829587 (87.27% are singletons); average occurrences: 1.227; average spacing: 10.039; total length: 8004879809 [M::mm_idx_gen::1451.464*1.33] collected minimizers [M::mm_idx_gen::1475.152*1.39] sorted minimizers [M::main::1618.966*1.35] loaded/built the index for 2565 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 2565 [M::mm_idx_stat::1636.900*1.34] distinct minimizers: 628021583 (85.58% are singletons); average occurrences: 1.277; average spacing: 10.033; total length: 8047542090 [M::mm_idx_gen::2001.701*1.33] collected minimizers [M::mm_idx_gen::2021.824*1.37] sorted minimizers [M::main::2160.228*1.34] loaded/built the index for 3457 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 3457 [M::mm_idx_stat::2179.000*1.33] distinct minimizers: 591076253 (82.86% are singletons); average occurrences: 1.350; average spacing: 10.076; total length: 8037822037 [M::mm_idx_gen::2539.045*1.33] collected minimizers [M::mm_idx_gen::2560.269*1.36] sorted minimizers [M::main::2712.908*1.33] loaded/built the index for 2598 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 2598 [M::mm_idx_stat::2729.966*1.33] distinct minimizers: 698318602 (91.21% are singletons); average occurrences: 1.141; average spacing: 10.063; total length: 8019977605 [M::mm_idx_gen::3096.801*1.33] collected minimizers [M::mm_idx_gen::3120.064*1.36] sorted minimizers [M::main::3273.543*1.34] loaded/built the index for 2525 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 2525 [M::mm_idx_stat::3291.652*1.33] distinct minimizers: 699778903 (90.75% are singletons); average occurrences: 1.143; average spacing: 10.037; total length: 8031174054 [M::mm_idx_gen::3324.592*1.33] collected minimizers [M::mm_idx_gen::3326.721*1.33] sorted minimizers [M::main::3340.517*1.33] loaded/built the index for 342 target sequence(s) [M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 342 [M::mm_idx_stat::3342.379*1.33] distinct minimizers: 60619798 (97.28% are singletons); average occurrences: 1.035; average spacing: 10.030; total length: 629556638 [M::main] Version: 2.30-r1287 [M::main] CMD: minimap2 -d WoLr2.map-hifi.mmi --seed 42 -x map-hifi -t 8 -a --MD --eqx /dev/fd/63 [M::main] Real time: 3343.744 sec; CPU: 4453.988 sec; Peak RSS: 38.447 GB