Taxonomy of sampled genomes
======

The NCBI taxonomy is used by default, but the GTDB taxonomy is also provided.

Files:

 - nodes.dmp and names.dmp: A shrinked NCBI taxonomy database (taxdump) which
   only contains relevant taxonomy IDs.
 - taxid.map: Mapping of genome IDs to NCBI taxonomy IDs.
 - ranks.tsv: Taxonomic assignments of genomes at individual ranks.
 - lineages.txt: Mapping of genome IDs to Greengenes-style lineage strings.
 - lineages.ext.txt: Mapping of genome IDs to lineage strings, extended (with
   subspecies where available).
 - lin2tid.txt: Mapping of lineage strings to taxonomy IDs.
 - taxdump/: Original NCBI taxonomy database (not shrinked).
 - gtdb/: GTDB taxonomy.

More taxonomy information is provided at our website:

 - https://biocore.github.io/wol/data/taxonomy/